Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs28630738 chr2:242558777 C/T 4.1E-11 178 25.87 24.7 10.3 KM Plot
PCPG rs28631991 chr18:44150258 G/A 1.01E-7 176 25.17 27.4 19.87 KM Plot
PCPG rs28643511 chr16:89590060 G/A 0.000192 177 26.78 25.4 19.53 KM Plot
PCPG rs28648517 chr17:74704972 T/C 0.000173 175 25.97 14.63 13.5 KM Plot
PCPG rs28655575 chr10:29854065 C/T 5.6E-11 176 25.67 17.52 10.3 KM Plot
PCPG rs28661943 chr16:89960618 C/T 0.000226 170 25.87 20.13 36.37 KM Plot
PCPG rs28668543 chr11:46273454 G/A 4.62E-5 175 25.53 25.17 25.4 KM Plot
PCPG rs28668669 chr4:4531182 C/G 0.000293 175 25.47 25.87 19.22 KM Plot
PCPG rs28684616 chr17:53763943 T/A 0.000133 173 25.87 17.93 17.27 KM Plot
PCPG rs2869492 chr16:12071341 T/C 0.000272 174 25.33 26.05 24.35 KM Plot
PCPG rs28700192 chr8:126190872 G/A 2.95E-5 178 25.35 28.3 4.17 KM Plot
PCPG rs28710979 chr16:1738770 C/T 0 173 25.53 19.3 2.93 KM Plot
PCPG rs2873438 chr6:123123651 T/C 1.46E-8 173 7.03 26.53 24.85 KM Plot
PCPG rs28753220 chr17:80515202 C/T 4.21E-5 178 25.97 19.72 7.2 KM Plot
PCPG rs28846155 chr17:80515071 G/A 4.21E-5 178 25.97 19.72 7.2 KM Plot